carla - RISC2 Project https://www.risc2-project.eu Tue, 10 Oct 2023 15:16:36 +0000 en-US hourly 1 https://wordpress.org/?v=6.6.2 RISC2 returns to the largest HPC conference in Latin America with its final results https://www.risc2-project.eu/2023/10/10/risc2-project-returns-to-the-largest-hpc-conference-in-latin-america-with-its-final-results/ Tue, 10 Oct 2023 15:15:39 +0000 https://www.risc2-project.eu/?p=3049 CARLA 2023: RISC2 Results Presented at Largest HPC Conference in Latin America https://www.risc2-project.eu/2023/09/28/carla-2023-risc2-results-presented-at-largest-hpc-conference-in-latin-america/ Thu, 28 Sep 2023 10:21:06 +0000 https://www.risc2-project.eu/?p=3033 From September 18 to 22, Cartagena de Indias, Colombia, hosted the Latin America High-Performance Computing Conference (CARLA), which brought together around 300 researchers in the field from around the world — with particular emphasis on the presence of young and female researchers . With a varied program, the event aimed to provide a discussion forum to […]

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From September 18 to 22, Cartagena de Indias, Colombia, hosted the Latin America High-Performance Computing Conference (CARLA), which brought together around 300 researchers in the field from around the world — with particular emphasis on the presence of young and female researchers . With a varied program, the event aimed to provide a discussion forum to encourage the growth and strengthening of the High-Performance Computing community in Latin America, focusing on the exchange and dissemination of ideas, techniques, and research, as well as their application.

Given the nature of the project, RISC2 could not fail to be represented through its partners and with a strong presence in the event’s program. Carlos J. Barrios, researcher from the Universidad Industrial de Santander and RISC2 partner was responsible for opening CARLA, with his address setting the tone for the conference, emphasizing the importance of collaborative efforts and knowledge sharing in furthering the frontiers of HPC.

Fabrizio Gagliardi, the coordinator of RISC2, also took center stage with a special talk that introduced the audience to the mission and objectives of the RISC2 project. The presentation shed light on the pivotal role that RISC2 plays in advancing HPC research and development of the cooperation between the two continents in this field. Gagliardi participated in the EuroHPCLatam panel: Policy and Global Actions, which included representatives from Red Clara, CAF and the Ministry of CyT Colombia. This panel explored the policies and global actions required to propel HPC forward in Latin America, emphasizing collaboration between key stakeholders.

Another highlight of CARLA 2023 was the tribute to Mateo Valero, one of the promoters of RISC2. Valero’s dedication and contributions to the field were celebrated through an award with his name and one he was the first recepient, underscoring the lasting impact of his work on the entire HPC community.

This event was particularly important as it coincided with the end of the RISC2 project and the presentation of its results. Over the course of three years, the initiative has strengthened contacts and promoted the exchange of knowledge between researchers from Latin America and Europe through the organization of nine webinars, the support of several schools, workshops, and other training events in the field for young students and researchers. During this period, RISC2 partners also participated in several conferences and ceremonies with policymakers to raise awareness of the importance of continuing to support and prioritize this area of research in the future.

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RISC2’s partners gather in Brussels to reflect on three years of collaboration between EU and Latin America https://www.risc2-project.eu/2023/07/26/risc2s-partners-gather-in-brussels-to-reflect-on-three-years-of-collaboration-between-eu-and-latin-america/ Wed, 26 Jul 2023 12:03:56 +0000 https://www.risc2-project.eu/?p=2992 Over the past three years, the RISC2 project has established a network for the exchange of knowledge and experience that has enabled its European and Latin American partners to strengthen relations in HPC and take significant steps forward in this area. With the project quickly coming to an end, it was time to meet face-to-face […]

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Over the past three years, the RISC2 project has established a network for the exchange of knowledge and experience that has enabled its European and Latin American partners to strengthen relations in HPC and take significant steps forward in this area. With the project quickly coming to an end, it was time to meet face-to-face in Brussels to reflect on the progress and achievements, the goals set, the difficulties faced, and, above all, what can be expected for the future.

The session began with a welcome and introduction by Mateo Valero (BSC), one of the main drivers of this cooperation and a leading name in the field of HPC. This intervention was later complemented by Fabrizio Gagliardi (BSC). Afterward, Elsa Carvalho (INESC TEC) presented the work done in terms of communication by the RISC2 team, an important segment for all the news and achievements to reach all the partners and countries involved.

Carlos J. Barrios Hernandez then presented the work done within the HPC Observatory, a relevant source of information that European and Latin American research organizations can address with HPC and/or AI issues.

The session closed with an important and pertinent debate on how to strengthen cooperation in HPC between the European Union and Latin America, in which all participants contributed and gave their opinion, committing to efforts so that the work developed within the framework of RISC2 is continued.

What our partners had to say about the meeting?

Rafael Mayo Garcia, CIEMAT:

“The policy event organized by RISC2 in Brussels was of utmost importance for the development of HPC and digital capabilities for a shared infrastructure between EU and LAC. Even more, it has had crucial contributions to international entities such as CYTED, the Ibero-American Programme for the Development of Science and Technology. On the CIEMAT side, it has been a new step beyond for building and participating in a HPC shared ecosystem.”

Esteban Meneses, CeNAT:

“In Costa Rica, CeNAT plays a critical role in fostering technological change. To achieve that goal, it is fundamental to synchronize our efforts with other key players, particularly government institutions. The event policy in Brussels was a great opportunity to get closer to our science and technology ministry and start a dialogue on the importance of HPC, data science, and artificial intelligence for bringing about the societal changes we aim for.”

Esteban Mocskos, UBA:

“The Policy Event recently held in Brussels and organized by the RISC2 project had several remarkable points. The gathering of experts in HPC research and management in Latin America and Europe served to plan the next steps in the joint endeavor to deepen the collaboration in this field. The advance in management policies, application optimization, and user engagement are fundamental topics treated during the main sessions and also during the point-to-point talks in every corner of the meeting room.
I can say that this meeting will also spawn different paths in these collaboration efforts that we’ll surely see their results during the following years with a positive impact on both sides of this fruitful relationship: Latin America and Europe.”

Sergio Nesmachnow, Universidad de la República:

“The National Supercomputing Center (Uruguay) and Universidad de la República have led the development of HPC strategies and technologies and their application to relevant problems in Uruguay. Specific meetings such as the policy event organized by RISC2 in Brussels are key to present and disseminate the current developments and achievements to relevant political and technological leaders in our country, so that they gain knowledge about the usefulness of HPC technologies and infrastructure to foster the development of national scientific research in capital areas such as sustainability, energy, and social development. It was very important to present the network of collaborators in Latin America and Europe and to show the involvement of institutional and government agencies.

Within the contacts and talks during the organization of the meeting, we introduced the projecto to national authorities, including the National Director of Science and Technology, Ministry of Education and Culture, and the President of the National Agency for Research and Innovation, as well as the Uruguayan Agency for International Cooperation and academic authorities from all institutions involved in the National Supercomputing Center initiative. We hope the established contacts can result in productive joint efforts to foster the development of HPC and related scientific areas in our country and the region.”

Carla Osthoff, LNCC:

“In Brazil, LNCC is critical in providing High Performance Computing Resources for the Research Community and training Human Resources and fostering new technologies. The policy event organized by RISC2 in Brussels was fundamental to synchronizing LNCC efforts with other government institutions and international  entities. On the LNCC side, it has been a new step beyond building and participating in an HPC-shared ecosystem.

Specific meetings such as the policy event organized by RISC2 in Brussels  were very important to present the network of collaborators in Latin America and Europe and to show the involvement of institutional and government agencies.

As a result of joint activities in research and development in the areas of information and communication technologies (ICT), artificial intelligence, applied mathematics, and computational modelling, with emphasis on the areas of scientific computing and data science, a Memorandum of Understanding (MoU) have been signed between LNCC and Inria/France. As a  result of new joint activities, LNCC and INESC TEC/Portugal are starting  collaboration through INESC TEC International Visiting Researcher Programme 2023.”

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CARLA 2023 https://www.risc2-project.eu/events/carla-2023/ Wed, 14 Jun 2023 14:52:06 +0000 https://www.risc2-project.eu/?post_type=mec-events&p=2939

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Developing Efficient Scientific Gateways for Bioinformatics in Supercomputer Environments Supported by Artificial Intelligence https://www.risc2-project.eu/2023/03/20/developing-efficient-scientific-gateways-for-bioinformatics-in-supercomputer-environments-supported-by-artificial-intelligence/ Mon, 20 Mar 2023 09:37:46 +0000 https://www.risc2-project.eu/?p=2781 Scientific gateways bring enormous benefits to end users by simplifying access and hiding the complexity of the underlying distributed computing infrastructure. Gateways require significant development and maintenance efforts. BioinfoPortal[1], through its CSGrid[2]  middleware, takes advantage of Santos Dumont [3] heterogeneous resources. However, task submission still requires a substantial step regarding deciding the best configuration that […]

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Scientific gateways bring enormous benefits to end users by simplifying access and hiding the complexity of the underlying distributed computing infrastructure. Gateways require significant development and maintenance efforts. BioinfoPortal[1], through its CSGrid[2]  middleware, takes advantage of Santos Dumont [3] heterogeneous resources. However, task submission still requires a substantial step regarding deciding the best configuration that leads to efficient execution. This project aims to develop green and intelligent scientific gateways for BioinfoPortal supported by high-performance computing environments (HPC) and specialised technologies such as scientific workflows, data mining, machine learning, and deep learning. The efficient analysis and interpretation of Big Data opens new challenges to explore molecular biology, genetics, biomedical, and healthcare to improve personalised diagnostics and therapeutics; finding new avenues to deal with this massive amount of information becomes necessary. New Bioinformatics and Computational Biology paradigms drive storage, management, and data access. HPC and Big Data advanced in this domain represent a vast new field of opportunities for bioinformatics researchers and a significant challenge. the BioinfoPortal science gateway is a multiuser Brazilian infrastructure. We present several challenges for efficiently executing applications and discuss the findings on improving the use of computational resources. We performed several large-scale bioinformatics experiments that are considered computationally intensive and time-consuming. We are currently coupling artificial intelligence to generate models to analyze computational and bioinformatics metadata to understand how automatic learning can predict computational resources’ efficient use. The computational executions are conducted at Santos Dumont, the largest supercomputer in Latin America, dedicated to the research community with 5.1 Petaflops and 36,472 computational cores distributed in 1,134 computational nodes.

By:

Carneiro, B. Fagundes, C. Osthoff, G. Freire, K. Ocaña, L. Cruz, L. Gadelha, M. Coelho, M. Galheigo, and R. Terra are with the National Laboratory of Scientific Computing, Rio de Janeiro, Brazil.

Carvalho is with the Federal Center for Technological Education Celso Suckow da Fonseca, Rio de Janeiro, Brazil.

Douglas Cardoso is with the Polytechnic Institute of Tomar, Portugal.

Boito and L, Teylo is with the University of Bordeaux, CNRS, Bordeaux INP, INRIA, LaBRI, Talence, France.

Navaux is with the Informatics Institute, the Federal University of Rio Grande do Sul, and Rio Grande do Sul, Brazil.

References:

Ocaña, K. A. C. S.; Galheigo, M.; Osthoff, C.; Gadelha, L. M. R.; Porto, F.; Gomes, A. T. A.; Oliveira, D.; Vasconcelos, A. T. BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Generation Computer Systems, v. 107, p. 192-214, 2020.

Mondelli, M. L.; Magalhães, T.; Loss, G.; Wilde, M.; Foster, I.; Mattoso, M. L. Q.; Katz, D. S.; Barbosa, H. J. C.; Vasconcelos, A. T. R.; Ocaña, K. A. C. S; Gadelha, L. BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. PeerJ, v. 1, p. 1, 2018.

Coelho, M.; Freire, G.; Ocaña, K.; Osthoff, C.; Galheigo, M.; Carneiro, A. R.; Boito, F.; Navaux, P.; Cardoso, D. O. Desenvolvimento de um Framework de Aprendizado de Máquina no Apoio a Gateways Científicos Verdes, Inteligentes e Eficientes: BioinfoPortal como Caso de Estudo Brasileiro In: XXIII Simpósio em Sistemas Computacionais de Alto Desempenho – WSCAD 2022 (https://wscad.ufsc.br/), 2022.

Terra, R.; Ocaña, K.; Osthoff, C.; Cruz, L.; Boito, F.; Navaux, P.; Carvalho, D. Framework para a Construção de Redes Filogenéticas em Ambiente de Computação de Alto Desempenho. In: XXIII Simpósio em Sistemas Computacionais de Alto Desempenho – WSCAD 2022 (https://wscad.ufsc.br/), 2022.

Ocaña, K.; Cruz, L.; Coelho, M.; Terra, R.; Galheigo, M.; Carneiro, A.; Carvalho, D.; Gadelha, L.; Boito, F.; Navaux, P.; Osthoff, C. ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression. In: Latin America High-Performance Computing Conference (CARLA), 2022, Rio Grande do Sul, Brazil. Proceedings of the Latin American High-Performance Computing Conference – CARLA 2022 (http://www.carla22.org/), 2022.

[1] https://bioinfo.lncc.br/

[2] https://git.tecgraf.puc-rio.br/csbase-dev/csgrid/-/tree/CSGRID-2.3-LNCC

[3] https://https://sdumont.lncc.br

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LNCC encourages the participation of girls and women in science and technology careers https://www.risc2-project.eu/2023/02/17/lncc-encourages-the-participation-of-girls-and-women-in-science-and-technology-careers/ Fri, 17 Feb 2023 10:10:38 +0000 https://www.risc2-project.eu/?p=2753 In January 2023, LNCC participated in the project “Futuras Cientistas” – in English, “Future Girls in Science” -, promoted by the Brazilian Ministry of Science and Technology. This project aims to stimulate the interest and participation of female high school students of the public school in the areas of science, technology, engineering, and mathematics, contributing […]

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In January 2023, LNCC participated in the project “Futuras Cientistas” – in English, “Future Girls in Science” -, promoted by the Brazilian Ministry of Science and Technology. This project aims to stimulate the interest and participation of female high school students of the public school in the areas of science, technology, engineering, and mathematics, contributing to gender equity in the professional market.

LNCC, represented by Carla Osthoff, Kary Ocaña and Ana Karl, presented theoretical and practical courses in Bioinformatics, HPC, Mathematical and Chemical Computing.

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LNCC’s HPC Summer School provided sessions related to HPC to their community https://www.risc2-project.eu/2023/01/30/lnccs-hpc-summer-school-provided-sessions-related-to-hpc-to-their-community/ Mon, 30 Jan 2023 11:31:48 +0000 https://www.risc2-project.eu/?p=2688 LNCC, one of the RISC2 Brazilian partners, organized the HPC Summer School “Escola Supercomputador Santos Dumont,” which took place between January 16 to 24, 2023, as part of the LNCC’s Summer Program. The School aimed to provide mini-courses and talks related to programming on high-performance computers, such as parallel programming models, profiling tools, and libraries […]

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LNCC, one of the RISC2 Brazilian partners, organized the HPC Summer School “Escola Supercomputador Santos Dumont,” which took place between January 16 to 24, 2023, as part of the LNCC’s Summer Program.

The School aimed to provide mini-courses and talks related to programming on high-performance computers, such as parallel programming models, profiling tools, and libraries for developing optimized parallel algorithms for the SDumont user community and the high-performance computing programming community.

Due to the extensive territory of Brazil and the number of research projects, it is mandatory to provide regular HPC schools for the research community. According to Carla Osthoff, one of the organizers of this school, “SDumont is the only Brazilian supercomputer dedicated to the research community that is part of the TOP 500 list. The Brazilian Ministry of Science and Technology offers free access to all Brazilian research projects in the country and foreign collaborators. Currently, we have 238 research projects from 18 research areas.  This edition of the School received 350 registrations, but we also provided online YouTube access to the community.”

The event happened remotely, and all the sessions are available on Youtube.

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LNCC participated in the 19th Brazilian Science and Technology National Week https://www.risc2-project.eu/2022/12/19/lncc-participated-in-the-19th-brazilian-science-and-technology-national-week/ Mon, 19 Dec 2022 14:09:22 +0000 https://www.risc2-project.eu/?p=2624 Carla Osthoff, LNCC’s researcher, presented the Santos Dumont Supercomputer on the 19th Brazilian Science and Technology National Week, organised by the Brazilian Ministry of Science and Technology. The talk “The Santos Dumont Supercomputer in the scenario of National and International Scientific Research” was presented on December 3, 2022, and is available here. 

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Carla Osthoff, LNCC’s researcher, presented the Santos Dumont Supercomputer on the 19th Brazilian Science and Technology National Week, organised by the Brazilian Ministry of Science and Technology.

The talk “The Santos Dumont Supercomputer in the scenario of National and International Scientific Research” was presented on December 3, 2022, and is available here. 

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Advanced Computing Collaboration to Growth Sustainable Ecosystems https://www.risc2-project.eu/2022/12/12/advanced-computing-collaboration-to-growth-sustainable-ecosystems/ Mon, 12 Dec 2022 10:45:48 +0000 https://www.risc2-project.eu/?p=2612 The impact of High-Performance Computing (HPC) in different contexts related to the needs of high capabilities and strategies to simulate or to compute is very known. In the development of the RISC2 project, observing the project’s main goals, it is not a potential impact to support scientific challenges recognised after the exploration but an essential […]

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The impact of High-Performance Computing (HPC) in different contexts related to the needs of high capabilities and strategies to simulate or to compute is very known. In the development of the RISC2 project, observing the project’s main goals, it is not a potential impact to support scientific challenges recognised after the exploration but an essential requirement for scientific, productive, and social activities. Different outcomes are presented in the academic spaces as the workshops and main tracks of the Latin American Conference on High-Performance Computing (CARLA 2023). In these spaces, different RISC2 proposals show how HPC allows competitiveness, demands collaboration to attack global interests, and guarantees sustainability.

In the European and Latin American (EuroLatAm) HPC ecosystems, it tis possible to identify actors in different domains: industry, academy, research, society, and government. Each of them, at different levels, has a group of demands or interactions, depending on the interests. I.e., the industry demands capabilities to have HPC solutions for productivity and wants skills from the academy to perform development actors to build applications to use solutions. Another example could be the relationship between research and the government. In the HPC Ecosystem, collaborations allow synergies to face common interests. Still, it demands policies and coordinated roadmaps to support long-term projects and activities with a clear impact on society.

Of course, a historical relationship exists between Latin America and Europe from colonial history. In the case of advanced computing projects, it is possible to identify, from the first EuroLatAm Grid Computing projects more than twenty years ago until the real supercomputing projects such as RISC and RISC2. Still, now, more with shared interests and the different EuroLatAm HPC projects improve competitiveness and collaboration. Competitiveness for industrial and productive business, partnership (and competitiveness) in science and education goals, and human wellness. So paraphrasing Mateo Valero “who does not compute does not compete”, I would add “who does not collaborate does not survive”.

Taking collaboration and competitiveness, the RISC2 project allows identifying sustainability elements and sustainable workflows for different projects. The impressive interaction between the actors of the HPC EuroLatAm ecosystem has not only given scientific results but also policies, recommendations, best practices, and new questions. For these outcomes, in the past 2022 Supercomputing Conference, RISC2 was awarded the 2022 HPCWire Editors’ Choice Award as the Best HPC Collaboration.

Sustainable advanced computing ecosystems and their growth are evident with the knowledge of the results of projects such as RISC2. Collaboration, interaction, and competitiveness build human development and guarantee development, technological diversification, and peer-to-peer relationships to attack common interests and problems. So, RISC2 is a crucial step to advance to a RISC3 as it was at the time of the previous RISC.

 

By Universidad Industrial de Santander

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LNCC is making efforts to promote the best HPC practices https://www.risc2-project.eu/2022/11/28/lncc-is-making-efforts-to-promote-the-best-hpc-practices/ Mon, 28 Nov 2022 09:16:45 +0000 https://www.risc2-project.eu/?p=2608 Our partner LNCC participated in different events to promote interaction and exchange of knowledge and the best HPC practices between Europe and Latin America. On November 7, 2022, LNCC researchers, Carla Osthoff and Kary Ocaña, participated in a seminar in collaboration with our partner Inria, with a presentation entitle “Developing Efficient Scientific Gateways for Bioinformatics […]

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Our partner LNCC participated in different events to promote interaction and exchange of knowledge and the best HPC practices between Europe and Latin America.

On November 7, 2022, LNCC researchers, Carla Osthoff and Kary Ocaña, participated in a seminar in collaboration with our partner Inria, with a presentation entitle “Developing Efficient Scientific Gateways for Bioinformatics in Supercomputer Environments Supported by Artificial Intelligence”. The seminar aimed at promoting the interaction between LNCC’s and Inria’s high-performance computing researchers.

On November 18, Carla Osthoff participated in a seminar organized by the University of Campinas, where she presented the Santos Dumont Supercomputer. The event aimed to promote the exchange of the best HPC practices, promoting the interaction between computer science researchers towards the definition of a coordinated policy and a concrete roadmap for the future.

On November 23, Carla Osthoff also presented the Santos Dumont Supercomputer, on an online lecture, organized by the Research Centre in Digitalization and Intelligent Robotics of the Polytechnic Institute of Bragança, promoting the knowledge exchange between both regions.

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