“The RISC2 project has proven to be a team effort in which European and Latin American partners worked together to drive HPC collaboration forward. We have been able to create a lively and active community across the Atlantic to stimulate dialogue and boost cooperation that won’t die with RISC2’s formal end”, says Fabrizio Gagliardi, manager director of RISC2.

Since 2021, this knowledge-sharing network has organised webinars, summer schools, meetings with policymakers and participated in conferences and dissemination events on both sides of the Atlantic. The project also resulted in the HPC Observatory Repository — a collection of documents and training materials produced as part of the project – and the White Paper on HPC R&I Collaboration Opportunities, a document that reviews the key socio-economic and environmental factors and trends that influence HPC needs.

These were two of the issues highlighted by European Commission officials and experts during the final evaluation of the project, which could provide continuity to the work carried out by the consortium over the last three years, in line with the wishes of the partners and the advice of the evaluators. “Beyond RISC2, we should keep the momentum and leverage the importance of Latin America in the frame of the Green Deal actions: HPC stakeholders should encourage policymakers to build bilateral agreements and offer open calls focused on HPC collaboration“, reflects Fabrizio Gagliardi.

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Given the nature of the project, RISC2 could not fail to be represented through its partners and with a strong presence in the event’s program. Carlos J. Barrios, researcher from the Universidad Industrial de Santander and RISC2 partner was responsible for opening CARLA, with his address setting the tone for the conference, emphasizing the importance of collaborative efforts and knowledge sharing in furthering the frontiers of HPC.

Fabrizio Gagliardi, the coordinator of RISC2, also took center stage with a special talk that introduced the audience to the mission and objectives of the RISC2 project. The presentation shed light on the pivotal role that RISC2 plays in advancing HPC research and development of the cooperation between the two continents in this field. Gagliardi participated in the EuroHPCLatam panel: Policy and Global Actions, which included representatives from Red Clara, CAF and the Ministry of CyT Colombia. This panel explored the policies and global actions required to propel HPC forward in Latin America, emphasizing collaboration between key stakeholders.

Another highlight of CARLA 2023 was the tribute to Mateo Valero, one of the promoters of RISC2. Valero’s dedication and contributions to the field were celebrated through an award with his name and one he was the first recepient, underscoring the lasting impact of his work on the entire HPC community.

This event was particularly important as it coincided with the end of the RISC2 project and the presentation of its results. Over the course of three years, the initiative has strengthened contacts and promoted the exchange of knowledge between researchers from Latin America and Europe through the organization of nine webinars, the support of several schools, workshops, and other training events in the field for young students and researchers. During this period, RISC2 partners also participated in several conferences and ceremonies with policymakers to raise awareness of the importance of continuing to support and prioritize this area of research in the future.

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By:

Carneiro, B. Fagundes, C. Osthoff, G. Freire, K. Ocaña, L. Cruz, L. Gadelha, M. Coelho, M. Galheigo, and R. Terra are with the National Laboratory of Scientific Computing, Rio de Janeiro, Brazil.

Carvalho is with the Federal Center for Technological Education Celso Suckow da Fonseca, Rio de Janeiro, Brazil.

Douglas Cardoso is with the Polytechnic Institute of Tomar, Portugal.

Boito and L, Teylo is with the University of Bordeaux, CNRS, Bordeaux INP, INRIA, LaBRI, Talence, France.

Navaux is with the Informatics Institute, the Federal University of Rio Grande do Sul, and Rio Grande do Sul, Brazil.

References:

Ocaña, K. A. C. S.; Galheigo, M.; Osthoff, C.; Gadelha, L. M. R.; Porto, F.; Gomes, A. T. A.; Oliveira, D.; Vasconcelos, A. T. BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Generation Computer Systems, v. 107, p. 192-214, 2020.

Mondelli, M. L.; Magalhães, T.; Loss, G.; Wilde, M.; Foster, I.; Mattoso, M. L. Q.; Katz, D. S.; Barbosa, H. J. C.; Vasconcelos, A. T. R.; Ocaña, K. A. C. S; Gadelha, L. BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. PeerJ, v. 1, p. 1, 2018.

Coelho, M.; Freire, G.; Ocaña, K.; Osthoff, C.; Galheigo, M.; Carneiro, A. R.; Boito, F.; Navaux, P.; Cardoso, D. O. Desenvolvimento de um Framework de Aprendizado de Máquina no Apoio a Gateways Científicos Verdes, Inteligentes e Eficientes: BioinfoPortal como Caso de Estudo Brasileiro In: XXIII Simpósio em Sistemas Computacionais de Alto Desempenho – WSCAD 2022 (https://wscad.ufsc.br/), 2022.

Terra, R.; Ocaña, K.; Osthoff, C.; Cruz, L.; Boito, F.; Navaux, P.; Carvalho, D. Framework para a Construção de Redes Filogenéticas em Ambiente de Computação de Alto Desempenho. In: XXIII Simpósio em Sistemas Computacionais de Alto Desempenho – WSCAD 2022 (https://wscad.ufsc.br/), 2022.

Ocaña, K.; Cruz, L.; Coelho, M.; Terra, R.; Galheigo, M.; Carneiro, A.; Carvalho, D.; Gadelha, L.; Boito, F.; Navaux, P.; Osthoff, C. ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression. In: Latin America High-Performance Computing Conference (CARLA), 2022, Rio Grande do Sul, Brazil. Proceedings of the Latin American High-Performance Computing Conference – CARLA 2022 (http://www.carla22.org/), 2022.

^[1] https://bioinfo.lncc.br/

^[2] https://git.tecgraf.puc-rio.br/csbase-dev/csgrid/-/tree/CSGRID-2.3-LNCC

^[3] https://https://sdumont.lncc.br

The post Developing Efficient Scientific Gateways for Bioinformatics in Supercomputer Environments Supported by Artificial Intelligence first appeared on RISC2 Project.

Date: February 22, 2023 | 4 p.m. (UTC)

The post Webinar: Developing complex workflows that include HPC, Artificial Intelligence and Data Analytics first appeared on RISC2 Project.

In the European and Latin American (EuroLatAm) HPC ecosystems, it tis possible to identify actors in different domains: industry, academy, research, society, and government. Each of them, at different levels, has a group of demands or interactions, depending on the interests. I.e., the industry demands capabilities to have HPC solutions for productivity and wants skills from the academy to perform development actors to build applications to use solutions. Another example could be the relationship between research and the government. In the HPC Ecosystem, collaborations allow synergies to face common interests. Still, it demands policies and coordinated roadmaps to support long-term projects and activities with a clear impact on society.

Of course, a historical relationship exists between Latin America and Europe from colonial history. In the case of advanced computing projects, it is possible to identify, from the first EuroLatAm Grid Computing projects more than twenty years ago until the real supercomputing projects such as RISC and RISC2. Still, now, more with shared interests and the different EuroLatAm HPC projects improve competitiveness and collaboration. Competitiveness for industrial and productive business, partnership (and competitiveness) in science and education goals, and human wellness. So paraphrasing Mateo Valero “who does not compute does not compete”, I would add “who does not collaborate does not survive”.

Taking collaboration and competitiveness, the RISC2 project allows identifying sustainability elements and sustainable workflows for different projects. The impressive interaction between the actors of the HPC EuroLatAm ecosystem has not only given scientific results but also policies, recommendations, best practices, and new questions. For these outcomes, in the past 2022 Supercomputing Conference, RISC2 was awarded the 2022 HPCWire Editors’ Choice Award as the Best HPC Collaboration.

Sustainable advanced computing ecosystems and their growth are evident with the knowledge of the results of projects such as RISC2. Collaboration, interaction, and competitiveness build human development and guarantee development, technological diversification, and peer-to-peer relationships to attack common interests and problems. So, RISC2 is a crucial step to advance to a RISC3 as it was at the time of the previous RISC.

By Universidad Industrial de Santander

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Our partners Carlos Barrios Hernandez (from Industrial University of Santander) and Esteban Meneses (from Costa Rica National High Technology Center) participated directly on the “Americas HPC Collaboration” session, on November 16, which aimed to showcase opportunities and experiences between different HPC networks. On this session, Philippe Navaux (from UFRGS and SCALAC) presented the RISC2 project.

It was also during the conference that RISC2 was honoured with the HPCwire Editors’ Choice Award for “Best HPC Collaboration (Academia/Government/Industry)” 2022.

The partners representing RISC2 were Fabrizio Gagliardi (from Barcelona Supercomputing Center), Rui Oliveira (from INESC TEC), Bernd Mohr (from Jülich Supercomputing Centre), Carlos Barrios Hernandez (from Industrial University of Santander), Esteban Meneses (from Costa Rica National High Technology Center), Pedro Alberto (From University of Coimbra), and Philippe Navaux (from UFRGS and SCALAC).

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