portugal - RISC2 Project https://www.risc2-project.eu Fri, 08 Sep 2023 15:16:12 +0000 en-US hourly 1 https://wordpress.org/?v=6.6.2 RISC2’s partners gather in Brussels to reflect on three years of collaboration between EU and Latin America https://www.risc2-project.eu/2023/07/26/risc2s-partners-gather-in-brussels-to-reflect-on-three-years-of-collaboration-between-eu-and-latin-america/ Wed, 26 Jul 2023 12:03:56 +0000 https://www.risc2-project.eu/?p=2992 Over the past three years, the RISC2 project has established a network for the exchange of knowledge and experience that has enabled its European and Latin American partners to strengthen relations in HPC and take significant steps forward in this area. With the project quickly coming to an end, it was time to meet face-to-face […]

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Over the past three years, the RISC2 project has established a network for the exchange of knowledge and experience that has enabled its European and Latin American partners to strengthen relations in HPC and take significant steps forward in this area. With the project quickly coming to an end, it was time to meet face-to-face in Brussels to reflect on the progress and achievements, the goals set, the difficulties faced, and, above all, what can be expected for the future.

The session began with a welcome and introduction by Mateo Valero (BSC), one of the main drivers of this cooperation and a leading name in the field of HPC. This intervention was later complemented by Fabrizio Gagliardi (BSC). Afterward, Elsa Carvalho (INESC TEC) presented the work done in terms of communication by the RISC2 team, an important segment for all the news and achievements to reach all the partners and countries involved.

Carlos J. Barrios Hernandez then presented the work done within the HPC Observatory, a relevant source of information that European and Latin American research organizations can address with HPC and/or AI issues.

The session closed with an important and pertinent debate on how to strengthen cooperation in HPC between the European Union and Latin America, in which all participants contributed and gave their opinion, committing to efforts so that the work developed within the framework of RISC2 is continued.

What our partners had to say about the meeting?

Rafael Mayo Garcia, CIEMAT:

“The policy event organized by RISC2 in Brussels was of utmost importance for the development of HPC and digital capabilities for a shared infrastructure between EU and LAC. Even more, it has had crucial contributions to international entities such as CYTED, the Ibero-American Programme for the Development of Science and Technology. On the CIEMAT side, it has been a new step beyond for building and participating in a HPC shared ecosystem.”

Esteban Meneses, CeNAT:

“In Costa Rica, CeNAT plays a critical role in fostering technological change. To achieve that goal, it is fundamental to synchronize our efforts with other key players, particularly government institutions. The event policy in Brussels was a great opportunity to get closer to our science and technology ministry and start a dialogue on the importance of HPC, data science, and artificial intelligence for bringing about the societal changes we aim for.”

Esteban Mocskos, UBA:

“The Policy Event recently held in Brussels and organized by the RISC2 project had several remarkable points. The gathering of experts in HPC research and management in Latin America and Europe served to plan the next steps in the joint endeavor to deepen the collaboration in this field. The advance in management policies, application optimization, and user engagement are fundamental topics treated during the main sessions and also during the point-to-point talks in every corner of the meeting room.
I can say that this meeting will also spawn different paths in these collaboration efforts that we’ll surely see their results during the following years with a positive impact on both sides of this fruitful relationship: Latin America and Europe.”

Sergio Nesmachnow, Universidad de la República:

“The National Supercomputing Center (Uruguay) and Universidad de la República have led the development of HPC strategies and technologies and their application to relevant problems in Uruguay. Specific meetings such as the policy event organized by RISC2 in Brussels are key to present and disseminate the current developments and achievements to relevant political and technological leaders in our country, so that they gain knowledge about the usefulness of HPC technologies and infrastructure to foster the development of national scientific research in capital areas such as sustainability, energy, and social development. It was very important to present the network of collaborators in Latin America and Europe and to show the involvement of institutional and government agencies.

Within the contacts and talks during the organization of the meeting, we introduced the projecto to national authorities, including the National Director of Science and Technology, Ministry of Education and Culture, and the President of the National Agency for Research and Innovation, as well as the Uruguayan Agency for International Cooperation and academic authorities from all institutions involved in the National Supercomputing Center initiative. We hope the established contacts can result in productive joint efforts to foster the development of HPC and related scientific areas in our country and the region.”

Carla Osthoff, LNCC:

“In Brazil, LNCC is critical in providing High Performance Computing Resources for the Research Community and training Human Resources and fostering new technologies. The policy event organized by RISC2 in Brussels was fundamental to synchronizing LNCC efforts with other government institutions and international  entities. On the LNCC side, it has been a new step beyond building and participating in an HPC-shared ecosystem.

Specific meetings such as the policy event organized by RISC2 in Brussels  were very important to present the network of collaborators in Latin America and Europe and to show the involvement of institutional and government agencies.

As a result of joint activities in research and development in the areas of information and communication technologies (ICT), artificial intelligence, applied mathematics, and computational modelling, with emphasis on the areas of scientific computing and data science, a Memorandum of Understanding (MoU) have been signed between LNCC and Inria/France. As a  result of new joint activities, LNCC and INESC TEC/Portugal are starting  collaboration through INESC TEC International Visiting Researcher Programme 2023.”

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Developing Efficient Scientific Gateways for Bioinformatics in Supercomputer Environments Supported by Artificial Intelligence https://www.risc2-project.eu/2023/03/20/developing-efficient-scientific-gateways-for-bioinformatics-in-supercomputer-environments-supported-by-artificial-intelligence/ Mon, 20 Mar 2023 09:37:46 +0000 https://www.risc2-project.eu/?p=2781 Scientific gateways bring enormous benefits to end users by simplifying access and hiding the complexity of the underlying distributed computing infrastructure. Gateways require significant development and maintenance efforts. BioinfoPortal[1], through its CSGrid[2]  middleware, takes advantage of Santos Dumont [3] heterogeneous resources. However, task submission still requires a substantial step regarding deciding the best configuration that […]

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Scientific gateways bring enormous benefits to end users by simplifying access and hiding the complexity of the underlying distributed computing infrastructure. Gateways require significant development and maintenance efforts. BioinfoPortal[1], through its CSGrid[2]  middleware, takes advantage of Santos Dumont [3] heterogeneous resources. However, task submission still requires a substantial step regarding deciding the best configuration that leads to efficient execution. This project aims to develop green and intelligent scientific gateways for BioinfoPortal supported by high-performance computing environments (HPC) and specialised technologies such as scientific workflows, data mining, machine learning, and deep learning. The efficient analysis and interpretation of Big Data opens new challenges to explore molecular biology, genetics, biomedical, and healthcare to improve personalised diagnostics and therapeutics; finding new avenues to deal with this massive amount of information becomes necessary. New Bioinformatics and Computational Biology paradigms drive storage, management, and data access. HPC and Big Data advanced in this domain represent a vast new field of opportunities for bioinformatics researchers and a significant challenge. the BioinfoPortal science gateway is a multiuser Brazilian infrastructure. We present several challenges for efficiently executing applications and discuss the findings on improving the use of computational resources. We performed several large-scale bioinformatics experiments that are considered computationally intensive and time-consuming. We are currently coupling artificial intelligence to generate models to analyze computational and bioinformatics metadata to understand how automatic learning can predict computational resources’ efficient use. The computational executions are conducted at Santos Dumont, the largest supercomputer in Latin America, dedicated to the research community with 5.1 Petaflops and 36,472 computational cores distributed in 1,134 computational nodes.

By:

Carneiro, B. Fagundes, C. Osthoff, G. Freire, K. Ocaña, L. Cruz, L. Gadelha, M. Coelho, M. Galheigo, and R. Terra are with the National Laboratory of Scientific Computing, Rio de Janeiro, Brazil.

Carvalho is with the Federal Center for Technological Education Celso Suckow da Fonseca, Rio de Janeiro, Brazil.

Douglas Cardoso is with the Polytechnic Institute of Tomar, Portugal.

Boito and L, Teylo is with the University of Bordeaux, CNRS, Bordeaux INP, INRIA, LaBRI, Talence, France.

Navaux is with the Informatics Institute, the Federal University of Rio Grande do Sul, and Rio Grande do Sul, Brazil.

References:

Ocaña, K. A. C. S.; Galheigo, M.; Osthoff, C.; Gadelha, L. M. R.; Porto, F.; Gomes, A. T. A.; Oliveira, D.; Vasconcelos, A. T. BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Generation Computer Systems, v. 107, p. 192-214, 2020.

Mondelli, M. L.; Magalhães, T.; Loss, G.; Wilde, M.; Foster, I.; Mattoso, M. L. Q.; Katz, D. S.; Barbosa, H. J. C.; Vasconcelos, A. T. R.; Ocaña, K. A. C. S; Gadelha, L. BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. PeerJ, v. 1, p. 1, 2018.

Coelho, M.; Freire, G.; Ocaña, K.; Osthoff, C.; Galheigo, M.; Carneiro, A. R.; Boito, F.; Navaux, P.; Cardoso, D. O. Desenvolvimento de um Framework de Aprendizado de Máquina no Apoio a Gateways Científicos Verdes, Inteligentes e Eficientes: BioinfoPortal como Caso de Estudo Brasileiro In: XXIII Simpósio em Sistemas Computacionais de Alto Desempenho – WSCAD 2022 (https://wscad.ufsc.br/), 2022.

Terra, R.; Ocaña, K.; Osthoff, C.; Cruz, L.; Boito, F.; Navaux, P.; Carvalho, D. Framework para a Construção de Redes Filogenéticas em Ambiente de Computação de Alto Desempenho. In: XXIII Simpósio em Sistemas Computacionais de Alto Desempenho – WSCAD 2022 (https://wscad.ufsc.br/), 2022.

Ocaña, K.; Cruz, L.; Coelho, M.; Terra, R.; Galheigo, M.; Carneiro, A.; Carvalho, D.; Gadelha, L.; Boito, F.; Navaux, P.; Osthoff, C. ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression. In: Latin America High-Performance Computing Conference (CARLA), 2022, Rio Grande do Sul, Brazil. Proceedings of the Latin American High-Performance Computing Conference – CARLA 2022 (http://www.carla22.org/), 2022.

[1] https://bioinfo.lncc.br/

[2] https://git.tecgraf.puc-rio.br/csbase-dev/csgrid/-/tree/CSGRID-2.3-LNCC

[3] https://https://sdumont.lncc.br

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LNCC no Ciclo de Palestras do CEDRI-IPB, Portugal https://www.risc2-project.eu/2022/11/23/lncc-no-ciclo-de-palestras-do-cedri-ipb-portugal/ Wed, 23 Nov 2022 09:35:32 +0000 https://www.risc2-project.eu/?p=2604 23 people gathered at the Costa Rica HPC School 2022 to learn more about HPC tools https://www.risc2-project.eu/2022/08/29/costa-rica-hpc-school-2022/ Mon, 29 Aug 2022 07:38:29 +0000 https://www.risc2-project.eu/?p=2318 The Costa Rica HPC School 2022, organized by CeNAT in collaboration with the RISC2 project, gathered 23 people between August 8 and 12, 2022, at the Costa Rica National High Technology Center. This event, which aimed at preparing students and researchers to introduce HPC tools in their workflows, discussed topics such as Shared-Memory Programming, Distributed-Memory […]

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The Costa Rica HPC School 2022, organized by CeNAT in collaboration with the RISC2 project, gathered 23 people between August 8 and 12, 2022, at the Costa Rica National High Technology Center.

This event, which aimed at preparing students and researchers to introduce HPC tools in their workflows, discussed topics such as Shared-Memory Programming, Distributed-Memory Programming, and High Performance Computing. Rui Oliveira, from INESC TEC, was the Keynote Speaker of this year’s edition of the event.  During his talk, Rui gave a historical perspective of HPC in Europe and Portugal, emphasizing the design and main considerations of the upcoming  Deucalion supercomputer at Minho Advanced Computing Center.

For Esteban Meneses, Costa Rica HPC School General Chair, the event is of strategic importance for the Central American region. As developing countries aim at catching up with European peers in the use of HPC for science and technology, having training resources is fundamental. An in-person event is also a fantastic opportunity for networking and building up truly interdisciplinary research teams.

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RISC2 partners met at UFRJ during the “Eureka meets the Atlantic” event https://www.risc2-project.eu/2022/04/21/risc2-partners-met-at-ufrj-during-the-eureka-meets-the-atlantic-event/ Thu, 21 Apr 2022 13:01:48 +0000 https://www.risc2-project.eu/?p=1812 Alvaro Coutinho and Marta Mattoso, from UFRJ, and Rui Oliveira, from INESC TEC, met during the “EUREKA meets the ATLANTIC” event, which took place between March 29-30 at UFRJ Campus, in Rio de Janeiro, Brazil, to discuss the collaboration between NACAD and MACC. For both RISC2 partner institutions, Earth Observatory is a key strategic R&D area, […]

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Alvaro Coutinho and Marta Mattoso, from UFRJ, and Rui Oliveira, from INESC TEC, met during the “EUREKA meets the ATLANTIC” event, which took place between March 29-30 at UFRJ Campus, in Rio de Janeiro, Brazil, to discuss the collaboration between NACAD and MACC. For both RISC2 partner institutions, Earth Observatory is a key strategic R&D area, to which UFRJ and INESC TEC allocate a significant quantity of resources, human and technologic.

“The foreseeable expansion of Eureka to Brazil means new great opportunities to all RISC2 partners”, said Rui Oliveira, member INESC TEC’s Board and director of the Center for Advanced Computing at the University of Minho (MACC).

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NCC Portugal Nways To GPU Programming Bootcamp https://www.risc2-project.eu/events/ncc-portugal-nways-to-gpu-programming-bootcamp/ Tue, 22 Mar 2022 14:04:01 +0000 https://www.risc2-project.eu/?post_type=mec-events&p=1728

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Open call for EU&LAC collaboration https://www.risc2-project.eu/2022/02/04/open-call-for-eulac-collaboration/ Fri, 04 Feb 2022 08:42:41 +0000 https://www.risc2-project.eu/?p=1608 Transnational consortia are invited to submit proposals related to the following 6 topics in the thematic fields of Global Challenges, Health, Biodiversity, and Energy. It is one of the specificities of this joint call that it includes four topics based on sharing large Research Infrastructures: GLOBAL CHALLENGES Global Challenges I – Interactions and integration between […]

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Transnational consortia are invited to submit proposals related to the following 6 topics in the thematic fields of Global Challenges, Health, Biodiversity, and Energy. It is one of the specificities of this joint call that it includes four topics based on sharing large Research Infrastructures:

GLOBAL CHALLENGES

Global Challenges I – Interactions and integration between the climate science, Social Sciences and Humanities (SSH) and other communities

Participating funding agencies from: Austria, Bolivia, Brazil (CONFAP), Dominican Republic, Germany, Panama, Poland, Spain (AEI), Turkey, Uruguay.

Global Challenges II – Cross-cutting digital research infrastructure

Participating funding agencies from: Austria, Bolivia, Brazil (CNPq, CONFAP), Dominican Republic, Germany, Panama, Spain (AEI), Turkey.

HEALTH

Health I – Personalised Medicine

Participating funding agencies from: Austria, Bolivia, Brazil (CNPq, CONFAP), Dominican Republic, Germany, Italy, Panama, Poland, Spain (AEI and ISCIII), Turkey.

Health II – EU-LAC Regional Hubs: Integrating research infrastructures for Health and Disease

Participating funding agencies from: Austria, Bolivia, Brazil (CONFAP), Dominican Republic, Germany, Italy, Panama, Peru, Portugal, Spain (AEI), Turkey, Uruguay.

BIODIVERSITY

Biodiversity and Ecosystem Services Research Infrastructures

Participating funding agencies from: Austria, Bolivia, Brazil (CNPq, CONFAP), Dominican Republic, Germany, Italy, Panama, Peru, Spain (AEI), Turkey.

ENERGY

Interoperability of energy data spaces for an optimized exploitation by producers and prosumers / Research Infrastructures

Participating funding agencies from: Austria, Bolivia, Brazil (CONFAP), Dominican Republic, Germany, Panama, Spain (AEI), Turkey

Applicants searching for potential European and / or Latin American & Caribbean partners are invited to register for free at the online ENRICH in LAC Matchmaking platform. This new platform enables virtual direct contacts and project initiation among RTI focussed researchers, start-ups, companies, soft landing hubs, and other organizations between the LAC region and Europe at any time.

Call documents are available here.

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Projeto europeu estimula cooperação entre continentes para melhorar o desempenho em computação de elevado desempenho https://www.risc2-project.eu/2022/01/27/pt-inesc-tec-website/ Thu, 27 Jan 2022 15:22:53 +0000 https://www.risc2-project.eu/?p=1567 Projeto europeu estimula cooperação entre continentes para melhorar o desempenho em computação de elevado desempenho https://www.risc2-project.eu/2021/12/17/bipinesctecmagazine/ Fri, 17 Dec 2021 15:08:00 +0000 https://www.risc2-project.eu/?p=1470